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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtctcttgcttctcagtgtagctatttttaattagcctagttaacggtttaacttaacaccaaatgatacagGGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGCCTAATAATTGTTCTGAG

Basic information

species Glycine max
transcript GLYMA10G06430.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06430.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G52970.1 (Arabidopsis thaliana), 3'ss of exon 5
----------------------gtagtctcttgcttctcagtgtagctatttttaattagcctagttaa-cggtttaacttaacaccaaatgatac-agGGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGCCTAATAATTGTTCTGAG----------------
                        |  |   || |   || | |   | |||||  || || |   ||| | |||||    || |     ||| || |||| |||||||||||||||||||| ||||| ||||| || || ||||||||  ||||||||||||| |  || || ||| | |||                
gcaagaaagctacctcgattaaaaaaaccgatgatcgccactttctttgttttttgtttgcatgtctaaactgttta---caatatggcttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCGAAACAACTGTGCAGAGATCCAATGAAGTATAT

upper sequence: GLYMA10G06430.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0040g01400.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------gtagtctcttgcttctcagtgtagctatttttaattagcctagtta--acggtttaacttaacaccaaatgatacagGGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGCCTAATAATTGTTCTGAG----------------
                            || |||| ||| | |||   | |  || |  ||    |||  |  || |||  | |    |     ||| ||||||||||||||| || |||||||| || || |||||||| || | ||||||||||||||| || || || |||||||| || |||                
gtgaactcaccctgttgcttggatcaatgtatcttacttgtaagtc--gttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacagGGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCAATATCAAATTGCTTGAGAGAACCTGTGGGCCCAAATAATTGCTCAGAGGTAAAATAGTACCGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402284|gb|EV272097.1|EV272097
EST:     GGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAA-G                         GGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTG
genomic: GGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtagtctctt ... aatgatacagGGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagctatttttaattagcctagttaacggtttaacttaacaccaaatgatacagGGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGCCTAATAATTGTTCTGAG
                                  acttaac  putative branch site (score: 3)
     tatttttaatta  TA-rich tract