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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagaatgtatattattcgttattattggttgtgttgctggaaatatgattagaattggaatacaatgaaattgacatctgatgttggattattttatgttgtggaattgacagGTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG

Basic information

species Glycine max
transcript GLYMA10G05610.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469579|gb|CD411607.1|CD411607
EST:     GTGGAGATGCATCTGCTAAGAGAGATGTTTATCAGAGTCCTAATGGCCAG                         GTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG
genomic: GTGGAGATGCATCTGCTAAGAGAGATGTTTATCAGAGTCCTAATGGCCAGgttgagaatg ... gaattgacagGTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG
EST: gi|193717499|gb|FK652869.1|FK652869
EST:     TGTTTATCAGAGTTCCCTAATGGCCAG                         GTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG
genomic: TGTTTATCAGAG-T-CCTAATGGCCAGgttgagaatg ... gaattgacagGTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG
EST: gi|16341802|gb|BI967397.1|BI967397
EST:     GTGGAGATGCATCTGCTAAGAGAGATGTTTATCAGAGTCCTAATGGCCAG                         GTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG
genomic: GTGGAGATGCATCTGCTAAGAGAGATGTTTATCAGAGTCCTAATGGCCAGgttgagaatg ... gaattgacagGTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatacaatgaaattgacatctgatgttggattattttatgttgtggaattgacagGTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACGAATTCTTAG
                             attattttatgttgt  TA-rich tract