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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attatcttcagtagtatgttattaatctattaggtacttcttgttttatgtttttagtgttttgtgtgatgctaacccttcgtcttacttggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAG

Basic information

species Glycine max
transcript GLYMA10G05130.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05130.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 3'ss of exon 5
---attatcttcagtagtatgttattaatctattaggtact--tcttgttttatgtttttagtgttttgtgtgatgctaacccttcgtcttacttggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAG
    |  | | || || ||   ||| | ||||||||||  |  ||   | | |    ||| || |   |    ||  |||    |  | ||   || |   ||||||||| ||| | ||||| ||||| ||||| || || || ||||| ||||||||||||||||| |||
tacctcttgtccaataatag--tatcattctattaggttatattcacatctcactccttttgtttggggaaccatattaaattctaatttt---tgttcaaacagGAGCCCGTTATACCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAG

upper sequence: GLYMA10G05130.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 3'ss of exon 5
-------attatcttcagtagtatgttattaatctattaggtacttcttgttttatgtttttagtgttttgtgtgatgctaacccttcgtcttacttggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAG
       || |  |  |  || ||   || |   | | || |   |||| ||| |  |  |          | | |||  || | |      || ||  |   |||||| || ||  | ||||| |||||||| ||||||||||||||||| || ||||| ||||||||||||
ttaatcaatcaagtctataagcat--catcagcatctcag-tctgtcttatttgac-tggtagaaaacacatctcatgtgaatcttgttgaatattttct---acagGAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTATTGGTCTGATGCCAATGATTGATCAG

upper sequence: GLYMA10G05130.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 5
-attatcttcagtagtatgttattaatctattaggtacttcttgttttatgtttttagtgttttgtgtgatgctaacccttcgtcttacttggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAG
 ||| | |  |   |  || | |     ||||   || | |         ||| | | ||     | | ||  |  |   | |  || |     |  |||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||
aattttttggatgtgcttggtttctgaatattccatattacaaagcaatggttataaatggaaactctcatattc-cttatggcttttcaaacatttacagGAACCAGTTCTTCCAGGATGCTTTCTCCGGGCTAAAGCTATTGGTCTCATGCCTATGATTGATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480494|gb|BG509837.1|BG509837
EST:     GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAG                         GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
genomic: GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGgtacttgaat ... ggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
EST: gi|151397331|gb|EV267204.1|EV267204
EST:     GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAG                         GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
genomic: GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGgtacttgaat ... ggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
EST: gi|31561493|gb|CD487331.1|CD487331
EST:     GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAG                         GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
genomic: GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGgtacttgaat ... ggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
EST: gi|58020419|gb|CX707161.1|CX707161
EST:     GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAG                         GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
genomic: GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGgtacttgaat ... ggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
EST: gi|192317150|gb|FK009765.1|FK009765
EST:     GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAG                         GAGCCAGTTCTTCCAGGTTGCTTTCTACGGACCAAAGCTATTGGACTCATG
genomic: GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGgtacttgaat ... ggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
EST: gi|192331411|gb|FK022716.1|FK022716
EST:     GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAA                         GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
genomic: GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGgtacttgaat ... ggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
EST: gi|192302348|gb|FG996658.1|FG996658
EST:     GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAG                         GAGCCAGTTCTTCCAGGTTGC-TTCTACGGGCCAAAGCTATTGGACTCATG
genomic: GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGgtacttgaat ... ggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
EST: gi|13479092|gb|BG508435.1|BG508435
EST:     GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAG                         GAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG
genomic: GTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGgtacttgaat ... ggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgtttttagtgttttgtgtgatgctaacccttcgtcttacttggttggacagGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAG
     tttttagt  TA-rich tract