1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtttaatgtgtatctttggtttgtattgtatataatataatttgaagttttttttctccccaatttatgatatcttcttactattacttttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGGCTGTATATGTGAAATACTATCCTCTATC
species | Glycine max |
transcript | GLYMA10G04920.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGAEST: gi|6228089|gb|AW156688.1|AW156688
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGA
EST: CTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|7233057|gb|AW568408.1|AW568408
genomic: CTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|6747653|gb|AW318166.1|AW318166
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|208208074|gb|GE003361.1|GE003361
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAEST: gi|6454107|gb|AW184855.1|AW184855
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAA
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|7796438|gb|AW781835.1|AW781835
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|209698517|gb|BW652396.1|BW652396
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|14258976|gb|BG881884.1|BG881884
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|18710289|gb|BM522491.1|BM522491
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|208140582|gb|GD938676.1|GD938676
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|254313974|gb|GR831603.1|GR831603
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|193532385|gb|FK492345.1|FK492345
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|254316119|gb|GR825928.1|GR825928
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|24205871|gb|BU965124.1|BU965124
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|22927270|gb|BU544409.1|BU544409
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|193316137|gb|FK282665.1|FK282665
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|209713107|gb|BW653814.1|BW653814
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGEST: gi|193577240|gb|FK536603.1|FK536603
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAG
EST: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAG GAGACTCATGCCGACTTTAAGAAGGCCAAGGA
genomic: CAATATGTACTGAAGCCGGTTTACTTGCTCTACGAGAACGCCGAATGAAGgtaagaaatc ... ttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGA
aagttttttttctccccaatttatgatatcttcttactattacttttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGGCTGTATATGTGAAATACTATCCTCTATC
ttcttac putative branch site (score: 2)
tcttcttactattact CT-rich tract
ttactattactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttaatgtgtatctttggtttgtattgtatataatataatttgaagttttttttctccccaatttatgatatcttcttactattacttttttgttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGGCTGTATATGTGAAATACTATCCTCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - -tggtttg