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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgactttaaatcttgaatgcactaatatacatttgttgtcttccctctcaggatcaagtattatttatttttccatgtctttttttaatgatcttgtgtcatttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTTGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGATCTTTC

Basic information

species Glycine max
transcript GLYMA10G04020.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04020.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0005g02990.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttgactttaaatcttgaatgcactaatatacatttgttgtcttccctctca-ggatcaagtattatttatttttccatgtctttttttaatgatcttgtgtcatttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTTGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGATCTTTC
||||| | |   |||  ||  | |   ||   | |  |||  | |  |   | |   ||| ||  |  | | | ||       | ||     | ||||  |||| |   || ||||||||||||||||| ||| ||||| || |||||| ||||||| ||||| || || ||  |||| || || ||||||||||| ||||||| |   | || | 
gtatgatcatgataa-cctgtattcttctccaaaatgtttagtttgctgtttttggtggaacacatgctgtatgtt-------ggctgggcatgatgagtttgttt--gttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTCGTGGTTATTTTCCTAATCATATACTATCTCACTAGGTGAAAAACCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193430346|gb|FK393292.1|FK393292
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgttgac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|192323181|gb|FK018952.1|FK018952
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgttgac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|192298747|gb|FG988613.1|FG988613
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgttgac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|31306277|gb|CD391480.1|CD391480
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgttgac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|193474018|gb|FK441583.1|FK441583
EST:     AGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: AGGCACTATGGATAAATTCAAAATGgtatgttgac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagtattatttatttttccatgtctttttttaatgatcttgtgtcatttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTTGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGATCTTTC
                            ttttaat  putative branch site (score: 3)
                                            tcatttttc  putative PPT
     attatttatttttcca  TA-rich tract