1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattactctacctaatgtatagttggcacaaatttgtttctctccaatttatcaaatttagtatctatctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAATGTGGGTG
species | Glycine max |
transcript | GLYMA10G03690.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAG GAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAATEST: gi|192322439|gb|FK014920.1|FK014920
genomic: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactc ... atctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
EST: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAG GAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAATEST: gi|192321147|gb|FK013579.1|FK013579
genomic: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactc ... atctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
EST: TCGTCAGTCGAG GAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAATEST: gi|21601666|gb|BQ611997.1|BQ611997
genomic: TCGTCAGTCGAGgtaattactc ... atctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
EST: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAG GAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
genomic: CTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactc ... atctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAAT
gttggcacaaatttgtttctctccaatttatcaaatttagtatctatctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAATGTGGGTG
tctatct CT-rich tract
aatttatcaaatttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattactctacctaatgtatagttggcacaaatttgtttctctccaatttatcaaatttagtatctatctattcagGAAGAAGGCGGTGAGGGAAGAAACCAGCCAGCCTGGGAGAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAATGTGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA