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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagttggctttttcttgtgtttgcttttgcagGATATTTGCTTTGGCAACTGTCTTGAGTTCCGTGCTCATATATAATTTGCCCGAGACG

Basic information

species Glycine max
transcript GLYMA10G03660.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 3'ss of exon 5
---------------gtaattgctttcagatcatgcattc-tgtgttctgtgttgaatca--tatatgattgtttagttggctttttcttgtgtttgcttttgcagGATATTTGCTTTGGCAACTGTCTTGAGTTCCGTGCTCATATATAATTTGCCCGAGACG
                  | ||     |  |    ||||    | |||| || |  |     || ||  |||||  ||    ||||  |  | | |  | | |||||||||||||||||||||||||||||||||| ||||| || || ||  | || ||||||
gtctgtgtgcagaaatggaatgtgaagaagtttcccatttactttttctatgatagaaaggttacattgttgtt-ggtatcattttattcatttcttttgtggcagGATATTTGCTTTGGCAACTGTCTTGAGTTCAGTGCTAATCTACAACCTTCCTGAGACG

upper sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G019361_T01 (Zea mays), 3'ss of exon 5
-gtaattgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagttggctttttcttgtgtttgcttttgcagGATATTTGCTTTGGCAACTGTCTTGAGTTCCGTGCTCATATATAATTTGCCCGAGACG
  |  | |||   | |     |||||||  ||   | ||  |  ||  || |||   || || |  | ||||     || |||| | |||||||||||||||||||||||| | ||||| ||||| || || ||  | || ||||||
gtttgtggctagaaaagagctcattctgatttactttttctaggatggataattaacta-ttagaatgttctc----tttctttggtagGATATTTGCTTTGGCAACTGTCCTAAGTTCGGTGCTTATCTACAACCTTCCTGAGACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgaatcatatatgattgtttagttggctttttcttgtgtttgcttttgcagGATATTTGCTTTGGCAACTGTCTTGAGTTCCGTGCTCATATATAATTTGCCCGAGACG
                              ctttttcttgtgtttg  CT-rich tract
          atatatgattgttta  TA-rich tract