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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgagtgttcgcatccatccaatcctttctactctcctctccctgcaaaaataaaagcaaaatagaagcattaagctgcttattttgtaaactggcataattgagaccatgctttcagATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAG

Basic information

species Glycine max
transcript GLYMA10G02920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02920.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g45350.3 (Oryza sativa), 3'ss of exon 5
gtgcgagtgttcgcatccatccaatcctttcta-ctctcctctccctgcaaaaataaaagcaaaatagaagcattaagctgcttattttgtaaactggcataattgagaccatgctttcagATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAG
                      | | |||  || |  |    |   |   ||  |||| ||    ||| || ||||      | || || |||            || |  ||||||  ||||||||||||||||||||| |||| |||| ||||||  ||||||||| ||||||||||||||||||
-------------------gttagtacttagtaacgattgcatttttattaatgtaaatgcttg-tagtagtatta-----ttcatgtt-taa------------gaaataatgcttgtagATGCTTGGAGTCAAGAGAACTGAAAGGGTTCTTCCAACTGGAACTTCATTGACTGTTGTTGGTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaagcattaagctgcttattttgtaaactggcataattgagaccatgctttcagATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAG
                                              tgctttc  CT-rich tract
                ttattttgtaaact  TA-rich tract