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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatagGCTCCCGGGGGTTATGGGCTCATGGCATACCGTTTTCCACCAATGCAGAATCAACCAGGTTTCCATAACATGAACATGAACCAAGTAAATGCAGTGAGGC

Basic information

species Glycine max
transcript GLYMA10G02700.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016439|gb|CX703181.1|CX703181
EST:     GAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAG                         GCTCCCGGGGGTTATGGGCTCATGGCATACCGTTTTCCACCAATGCAGAAT
genomic: GAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctg ... ttctcaatagGCTCCCGGGGGTTATGGGCTCATGGCATACCGTTTTCCACCAATGCAGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatagGCTCCCGGGGGTTATGGGCTCATGGCATACCGTTTTCCACCAATGCAGAATCAACCAGGTTTCCATAACATGAACATGAACCAAGTAAATGCAGTGAGGC
                                      tcattttttctc  CT-rich tract
                       tatatgtttgaataat  TA-rich tract