1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagagggacatgtgtgtgtgtgtagagaaaagtcaaaacattttttatttcagcagttgcgttattctgacatttttaaattggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCACTTCTTTATATGGAGTGACCCAGTTGTCATCCCCAACATCAGCTTTTG
species | Glycine max |
transcript | GLYMA10G02550.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCEST: gi|193555678|gb|FK513225.1|FK513225
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCEST: gi|193604339|gb|FK558968.1|FK558968
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCEST: gi|208284802|gb|GE085616.1|GE085616
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCEST: gi|193643223|gb|FK586912.1|FK586912
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCGACCTACTGTTGGGGCCEST: gi|193324281|gb|FK288389.1|FK288389
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: CTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTTTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGEST: gi|207754735|gb|GD729316.1|GD729316
genomic: CTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGT--CATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGG
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCEST: gi|208178335|gb|GD978288.1|GD978288
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCEST: gi|207783570|gb|GD758062.1|GD758062
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCEST: gi|193684651|gb|FK622259.1|FK622259
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCEST: gi|193321144|gb|FK286988.1|FK286988
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
EST: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCG GCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
genomic: TACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGgtgagaggga ... attggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCC
aaaacattttttatttcagcagttgcgttattctgacatttttaaattggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCACTTCTTTATATGGAGTGACCCAGTTGTCATCCCCAACATCAGCTTTTG
ttctgac putative branch site (score: 2)
ttattctgacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagggacatgtgtgtgtgtgtagagaaaagtcaaaacattttttatttcagcagttgcgttattctgacatttttaaattggtgcagGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCACTTCTTTATATGGAGTGACCCAGTTGTCATCCCCAACATCAGCTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT