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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaattactcatccatcacatgtattctgctgtatatatattgcaaaactagatagaaagtaaaaactaataatggtttgaaatttacatttttgtgttccatggttttagGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCGGACAATTTCGTCTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTC

Basic information

species Glycine max
transcript GLYMA10G02130.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9439791|gb|BE440305.1|BE440305
EST:     CCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAG                         GAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCG
genomic: CCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtacaaatta ... atggttttagGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCG
EST: gi|26058641|gb|CA801555.1|CA801555
EST:     CCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAG                         GAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCG
genomic: CCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtacaaatta ... atggttttagGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtaaaaactaataatggtttgaaatttacatttttgtgttccatggttttagGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCGGACAATTTCGTCTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTC
        aactaat  putative branch site (score: 2)
           taataatggtttgaaa  TA-rich tract