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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacttgattcccagttttctactaaaaggaaatactagtatctactttgtgaatcattaaattaactttttcagtattttttgtagGTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGGCGATCGGAGCCATTCATGACAATATTAAGCGTCACCATCATCAG

Basic information

species Glycine max
transcript GLYMA10G01680.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31476514|gb|CD418542.1|CD418542
EST:     TCGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACG                         GTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATT
genomic: TCGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGgtaagtactt ... ttttttgtagGTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATT
EST: gi|57575478|gb|CX548453.1|CX548453
EST:     TCGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACG                         GTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATT
genomic: TCGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGgtaagtactt ... ttttttgtagGTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATT
EST: gi|15814766|gb|BI787041.1|BI787041
EST:     TCGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACG                         GTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATT
genomic: TCGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGgtaagtactt ... ttttttgtagGTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactagtatctactttgtgaatcattaaattaactttttcagtattttttgtagGTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGGCGATCGGAGCCATTCATGACAATATTAAGCGTCACCATCATCAG
                            aattaac  putative branch site (score: 2)
                                           tatttttt  putative PPT
                    aatcattaaattaact  TA-rich tract