1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactatattaaaatttattttcttctttcttgtaagttttactattaaggcaattgtctatatcactttgttggttctcatttcttctatttcttattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTG
species | Glycine max |
transcript | GLYMA10G01280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAG ATATGTAGAGCTCTAGCTTATATTCAEST: gi|193717136|gb|FK652146.1|FK652146
genomic: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCA
EST: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACCCTATTTTTACCAG ATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGEST: gi|207704815|gb|GD684636.1|GD684636
genomic: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGG
EST: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAG ATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGEST: gi|208333681|gb|GE129554.1|GE129554
genomic: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGG
EST: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAG ATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGEST: gi|24205503|gb|BU964756.1|BU964756
genomic: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGG
EST: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAG ATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGEST: gi|208090264|gb|GD885285.1|GD885285
genomic: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGG
EST: ATGAATCAAAGAATGCCTTTTGTATATATGTGAAACTCTATTTTTACCAG ATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGEST: gi|151399753|gb|EV269624.1|EV269624
genomic: ATGAATCAAAGAATGCC-TTTG-ATATATGTGAAACTCTATTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGG
EST: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAG ATATGTAGAGCTCTGGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGEST: gi|193317982|gb|FK284636.1|FK284636
genomic: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGG
EST: AATC-AAGAATGCCTTTGATATATGTGAAACTCTATTTTTTACCAG ATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGEST: gi|19453652|gb|BM955062.1|BM955062
genomic: AATCAAAGAATGCCTTTGATATATGTGAAACTCTA-TTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGG
EST: AAATGAATCAAAGAATGCCTTTGATATACGTGAAACTCTATTTTTACCAG ATATGTAGAGCACTAGCTTATATTCACAACTGCATTGGAGTGTCTCACAGG
genomic: AAATGAATCAAAGAATGCCTTTGATATATGTGAAACTCTATTTTTACCAGgtactatatt ... tattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGG
gcaattgtctatatcactttgttggttctcatttcttctatttcttattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTG
ttctcatttcttctat CT-rich tract
atttcttctatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatattaaaatttattttcttctttcttgtaagttttactattaaggcaattgtctatatcactttgttggttctcatttcttctatttcttattttttagATATGTAGAGCTCTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG