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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattttgatggtgggagcggggaatggtaggctatattagctattttcaattttaaaacttttacctggagctcaccaaacttgctctttttgaacagGCTCGATTTCGCTTAGATGATATGAAGGCATCATGAATCACAGATTCAGAAGTTCCTGACGAGTAGCTCTTGCATGCTCACTCTCATTTCATATCAACTT

Basic information

species Glycine max
transcript GLYMA10G00690.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666708|gb|AW278167.1|AW278167
EST:     AATTTTGTACAACCTTTTCTCCTCTCCTTCAAGAGATTCACAAGTTTTTG                         GCTCGATTTCGCTTAGATGATATGAAGGCATCATGAATCACAGATTCAGAA
genomic: AATTTTGTACAACCTTTTCTCCTCTCCTTCAAGAGATTCACAAGTTTTTGgtaagaacta ... ttttgaacagGCTCGATTTCGCTTAGATGATATGAAGGCATCATGAATCACAGATTCAGAA
EST: gi|22930207|gb|BU547346.1|BU547346
EST:     AATTTTGTACAACCTTTTCTCCTCTCCTTCAAGAGATTCACAAGTTTTTG                         GCTCGATTTCGCTTAGATGATATGAAGGCATCATGAATCACAGATTCAGAA
genomic: AATTTTGTACAACCTTTTCTCCTCTCCTTCAAGAGATTCACAAGTTTTTGgtaagaacta ... ttttgaacagGCTCGATTTCGCTTAGATGATATGAAGGCATCATGAATCACAGATTCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcaattttaaaacttttacctggagctcaccaaacttgctctttttgaacagGCTCGATTTCGCTTAGATGATATGAAGGCATCATGAATCACAGATTCAGAAGTTCCTGACGAGTAGCTCTTGCATGCTCACTCTCATTTCATATCAACTT
                          agctcac  putative branch site (score: 3)
                                     cttgctcttttt  putative PPT
     aattttaaaactttta  TA-rich tract