Sequence
atgc intronic sequence ATGC exonic sequence...tgtagtcatctctgctctatggatattgttggaattatttgacttctttggtatgtttccaacaactaattaatgatgatttgacctcttcttgatgcagATGGGAGGTAGAAACACCGTTCTGGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCGGATGTTACCCATC
Basic information
species | Glycine max |
transcript | GLYMA10G00530.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G00530.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 13
----tgtagtcatctctgctctatggatattgttggaattatttg-acttctttggtatgtttccaacaactaa---------ttaatgatgatttgacctct----tcttgatgcagATGGGAGGTAGAAACACCGTTCTGGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCGGATGTTACCCATC
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gtaccaaatacttataaaccaagcagttaatacttagcttgtctacacaaatgtagtgtaatgcagtaagcagacttgcagcattgctaatgccttgcatttcggagttgtgatacagATGGGAGGAAGAAACACCGTGCTGCTGGATGCAATAAGTTGGAGGATTCCTTTGGTCAGTGACATACCAACTATTATATTTGGTGCAGATGTCACGCATC
upper sequence: GLYMA10G00530.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 3'ss of exon 13
tgtagtcatctctgctctatggatattgttggaattatttgacttctttggtatgtttccaacaactaattaatgatgatttgacctcttcttgatg-cagATGGGAGGTAGAAACACCGTTCTGGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCGGATGTTACCCATC
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--------------gtgaatagtttttactgctgt-atcgaagattttcgat-tgtttttagta--ttatgaatctcagatctttctatgtttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCACTGGTTAGCGATATACCGACAATCATTTTTGGCGCAGACGTGACTCACC
upper sequence: GLYMA10G00530.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 11
tgtagtc-atctctgctctatggatattgttggaatta--tttgacttctttggtatgtttccaacaactaattaatgatgatttgacctcttcttgatgcagATGGGAGGTAGAAACACCGTTCTGGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCGGATGTTACCCATC
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--tagtctgtttattctttcttaccatctgaagtgtcaaattaaaatatttcaaagcatgaataattacagaatccttacg-ttttttcttttcatgatgtagATGGGTGGTAGAAACACTGTCCTTTTGGATGCTATCAGTTGCAGGATACCATTAGTTAGTGACATACCAACCATAATATTTGGAGCAGATGTGACGCATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttggtatgtttccaacaactaattaatgatgatttgacctcttcttgatgcagATGGGAGGTAGAAACACCGTTCTGGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCGGATGTTACCCATC
tttgacctcttctt CT-rich tract
taattaatgatgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtagtcatctctgctctatggatattgttggaattatttgacttctttggtatgtttccaacaactaattaatgatgatttgacctcttcttgatgcagATGGGAGGTAGAAACACCGTTCTGGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCGGATGTTACCCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - -ctctgct
- - - - - - - - - - - - -ttgttgg
- - - - - - - - - - - - - - - - - - - - - - - - -ggtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacctc