1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgacaatgaactgatgattttttattcgacaaggagaagtcatttataggtaagggatataaattgatgccattgctctggtaccatgattacattgcagGCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG
species | Glycine max |
transcript | GLYMA09G41380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAG GCCTGCAACAGTGAAGAAGATGGTTTAEST: gi|7795344|gb|AW780803.1|AW780803
genomic: GAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGgtaattgtat ... tacattgcagGCCTGCAACAGTGAAGAAGATGGTTTA
EST: GAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAG GCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATEST: gi|192330256|gb|FK020556.1|FK020556
genomic: GAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGgtaattgtat ... tacattgcagGCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGAT
EST: GAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTATACTAGTACAG -CCTGCAACAGTGA-GA-GATGGTTTATTTGGGTTTTGATT-GCATAGTGA
genomic: GAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGgtaattgtat ... tacattgcagGCCTGCAACAGTGAAGAAGATGGTTTATTTGG-TTTTGATTTGCATAGTGA
ataggtaagggatataaattgatgccattgctctggtaccatgattacattgcagGCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG
aattgat putative branch site (score: 4)
atataaattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacaatgaactgatgattttttattcgacaaggagaagtcatttataggtaagggatataaattgatgccattgctctggtaccatgattacattgcagGCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - aatgaac
- - - - - -tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat