1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gattttgatctagataaaatcatataggtgtactggtagctgactcattgaaattgaatcttgttcagaagctaatgattttactgattattctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTTCTAACATTACTGCATGCAGG
species | Glycine max |
transcript | GLYMA09G41070.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCATCAATTTGCTTAACTTCTAGT ACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACEST: gi|208159468|gb|GD955273.1|GD955273
genomic: ACCATCAATTTGCTTAACTTC-AG-gtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGAC
EST: ACCATCAATTTGCTTAACTTCTAGT ACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACEST: gi|51341493|gb|CO982810.1|CO982810
genomic: ACCATCAATTTGCTTAACTTC-AG-gtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGAC
EST: GAGACCACTGAACCATCAATTTGCTTAACTTCAG ACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAEST: gi|207732297|gb|GD706272.1|GD706272
genomic: GAGACCACTGAACCATCAATTTGCTTAACTTCAGgtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACA
EST: TTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAG ACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAEST: gi|10709069|gb|BF008793.1|BF008793
genomic: TTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGgtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACA
EST: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAG ACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAEST: gi|27423591|gb|CA935111.1|CA935111
genomic: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGgtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACA
EST: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAG ACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAEST: gi|16347036|gb|BI972631.1|BI972631
genomic: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGgtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACA
EST: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAG ACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAEST: gi|20811827|gb|BQ296305.1|BQ296305
genomic: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGgtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACA
EST: CTGTTCAGGCTACCTAGAGACCACTGGACCATCAATTTGCTTAACTTCAG ACCTGGAAACAAATGAGTGTTTGGAAAACEST: gi|151407222|gb|EV277037.1|EV277037
genomic: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGgtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAAC
EST: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAG ACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACA
genomic: CTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGgtcatttttt ... ttctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACA
cattgaaattgaatcttgttcagaagctaatgattttactgattattctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTTCTAACATTACTGCATGCAGG
tactgat putative branch site (score: 2)
ttattcttt CT-rich tract
attttactgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttgatctagataaaatcatataggtgtactggtagctgactcattgaaattgaatcttgttcagaagctaatgattttactgattattctttgcagACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTTCTAACATTACTGCATGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - -agataaaa
- - - - - - - - - - - - - - - - - - - -ctgactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg