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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatagtgacttcgttttggtgggggactacttgttttactttgttttagcaatgtctctctcacacacacacaattaataaaattgtattatgtacttgaatattctacttctgtcttgcactttgtatgtaacctaaattacatctagattattaaataacttcattgtctctggtatatagATTGGATGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGT

Basic information

species Glycine max
transcript GLYMA09G41040.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41040.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G398288_T01 (Zea mays), 3'ss of exon 2
gtagatagtgacttcgttttggtgggggactacttgttttactttgttttagcaatgtctctctcacacacacacaatt----aataaaattgtattatgtacttgaatattctacttctgtcttgcactttgtatgtaacct-aaattacatctagattattaaataacttcattgtctctggtatatagATTGGATGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGT
                                                | |  | ||   | || | || | |  | ||     | |||  ||||     | || | ||    | |  |    |     |     | ||   | | | |  || |   ||| | |  ||  | |   | ||   ||   || ||||||||  | ||||| ||||| || ||||||||| ||||||||||||||||| || |  ||||||| ||||||   || |||||  | || ||||||
-----------------------------------------------gtaaatactgcaaccctgaaaccctctgagttccttgacaaagctgtagccactgctggtatcagttccaacgaattcattttgcacctatatttttagagtgtatat---ttacttaccaatcttacattgtc--ataatcagGTTGGATGTTCTTGGTCTCCATGAATTCGATAGTGTGAGAAAAAGAATGTCTGTTATTGTAAGGTTTCCGGACAACAATGTGAAGGTTCTTGTGAAAGGT

upper sequence: GLYMA09G41040.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0058g01400.t01 (Vitis vinifera), 3'ss of exon 2
gtagatagtgacttcgttttggtgggggactacttgttttactttgttttagcaatgtctctctcacacacacacaattaataaaattgtattatgtacttgaatattctacttctgtcttgcactttgtatgtaacctaaa-ttacatctagattattaaataacttcattgtctct----ggtatatagATTGGATGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGT
||||  | | || || |  |       |   | || |  ||| ||  |  | | ||   | | |   | | ||    ||  |    | | |||   || ||| ||| |  |  |   | |  ||  |  |||||  | |||| ||   | |  | |  | ||| |||||||| | |||    |  || |||  ||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||| ||  | || ||  |  |  | || || || || || ||||||
gtag--aataacctcttacttaatactgtgcatttttggtacatt-ctccaactatccttgttttttata-acttggttgctgctctagaattgaatatttggataataaaaata-atataccaaatgctatgttgcttaaagttgtgtattcaatgattaattacttcattatttctatgtgcaatttagGCTGGATCTGTTGGGTCTGCATGAGTTTGATAGCGTGCGCAAAAGAATGTCTGTTGTCATCAGATTCCCCAATGATACTGTGAAAGTCTTGGTGAAAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaacctaaattacatctagattattaaataacttcattgtctctggtatatagATTGGATGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGT
                           aaataac  putative branch site (score: 2)
                                      ttgtctct  putative PPT
       taaattacatctagat  TA-rich tract