1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caatgaaagttaaatatttagatatatgactaactctactatgttatattaccctgcaaacacaaggcccttaatttggttataaactgtcattttgcagATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACT
species | Glycine max |
transcript | GLYMA09G39090.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACACAATTGGATTGCGATCCCTTGCTGCTGGTGGAAAATTATTGCAG ATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGEST: gi|23730653|gb|BU763417.1|BU763417
genomic: GACACAATTGGATTGCGATCCCTTGCTGCTGGTGGAAAATTATTGCAGgtaagtgtat ... cattttgcagATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGG
EST: GACACAATTGGATTGCGATCCCTTGCTGCTGGTGGAAAATTATTGCAG ATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGEST: gi|15814169|gb|BI786444.1|BI786444
genomic: GACACAATTGGATTGCGATCCCTTGCTGCTGGTGGAAAATTATTGCAGgtaagtgtat ... cattttgcagATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGG
EST: GACACAATTGGATTGCGATCCCTTGCTGCTGGTGGAAAATTATTGCAG ATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGG
genomic: GACACAATTGGATTGCGATCCCTTGCTGCTGGTGGAAAATTATTGCAGgtaagtgtat ... cattttgcagATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGG
atattaccctgcaaacacaaggcccttaatttggttataaactgtcattttgcagATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACT
ccttaat putative branch site (score: 4)
tcatttt putative PPT
ttaatttggttataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgaaagttaaatatttagatatatgactaactctactatgttatattaccctgcaaacacaaggcccttaatttggttataaactgtcattttgcagATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttaa