Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtttctctttgataagtcattcattgttgaaggaattatttatgttcttttgtgaatcaagtaatctcattttaactagtgtgagtggcagAGGAGCAAAGTATCATGAGGCTGAGCACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGAT

Basic information

species Glycine max
transcript GLYMA09G36830.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36830.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0089g01040.t01 (Vitis vinifera), 3'ss of exon 5
-gtgaggtttctctttgataagtcattcattgttga-aggaattatttatgttcttttg--tgaatcaagtaatctcattttaactagtgtgagtggcagAGGAGCAAAGTATCATGAGGCTGAGCACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGAT
  |     ||   | | |||  | ||   |||| || |   |  |  ||||   ||     | ||| |||  |  | |    ||  |   ||   |||||||| |  || ||| | ||| | |||  |||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| || || ||||||
aatttaaattaattgttatatattataatttgtagatatccacaaaatatgaaattaaaaattaatgaagcgaaatgacgaaaatgaccttgttgggcagAGGGGTGAAATATTACGAGCCAGAGTTCTGGAAATTTGGAGAGGAAGGGAACAAGTATTTCAGGCACGCCACTGGTCAAATCTATGCAATTTCGAAGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttatgttcttttgtgaatcaagtaatctcattttaactagtgtgagtggcagAGGAGCAAAGTATCATGAGGCTGAGCACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGAT
                                 ttttaac  putative branch site (score: 2)
                         taatctcattttaa  TA-rich tract