1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgaatgtgttttcattattattttttggcctgacctaggaacttcttgttgaactgattagtattttaatttgatactttttaattttttttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATACAAGAAGGATCTGATTAAGTTTAGCATCATTACATGTCGGAAGCCTGA
species | Glycine max |
transcript | GLYMA09G35680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATACGTCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGAT-AAAGGATEST: gi|208028235|gb|GD826844.1|GD826844
genomic: ATACG-CACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: TGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATEST: gi|207733498|gb|GD712750.1|GD712750
genomic: TGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATEST: gi|14008904|gb|BG725508.1|BG725508
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATEST: gi|6069513|gb|AW099184.1|AW099184
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATEST: gi|208124038|gb|GD925528.1|GD925528
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATEST: gi|209718925|gb|BW669114.1|BW669114
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
EST: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTG GACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
genomic: GATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCAGTGgtaagctcat ... ttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGAT
ttgttgaactgattagtattttaatttgatactttttaattttttttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATACAAGAAGGATCTGATTAAGTTTAGCATCATTACATGTCGGAAGCCTGA
ttttaat putative branch site (score: 3)
ctttttaatttttttt CT-rich tract
attagtattttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgtgttttcattattattttttggcctgacctaggaacttcttgttgaactgattagtattttaatttgatactttttaattttttttttgtccagGACTTAAAACCATAAAGGGAGCTTTGGCTATGCCATTGATGATAAAAGGATACAAGAAGGATCTGATTAAGTTTAGCATCATTACATGTCGGAAGCCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-gaatgtg
- - - - - - - - - - - - - - -ctgacct
- - - - - - - - - - - - - - - - - - - - - - cttgttg