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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcaatgcactgtgttagttgttctggtggccatcgttttataattatacaagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCATCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCT

Basic information

species Glycine max
transcript GLYMA09G35060.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G35060.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G135909_T01 (Zea mays), 3'ss of exon 3
gtaagttcaatgc----actgtgttagttgttc--tggtggccatcgttttataatt---------atac-aagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCATCTC---GCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCT
 | ||| |||  |    | |   ||  || ||    |  ||| || ||||| |  ||         |||| || ||| ||  || |   |||     | |||||||||||||||||||||| |||||||  |  ||||| ||     | || ||  | || || || || ||||||||||| || |  ||  |||| ||     
-ttagtccaaatctaggattacattcttttttggacgaaggcaatagttttgttcttgactggaggatactaacttgcatccttatggttatgactttcagGTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCATCATTTTCTTCAATTGGATCCGTTCCTGCTCCAAGGGAGATTGTTGAGC---

upper sequence: GLYMA09G35060.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G060999_T01 (Zea mays), 3'ss of exon 3
---------------------------------------------------------------------------------------------------gtaagttcaatgcactgtgttag--ttgttctggtggccatcgttttataattatac-aagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATC---ATCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCT
                                                                                                     | || | |   |     ||||  |  |  |  ||  | |   |  | ||  |||| || ||| ||  ||||   ||||    | |||||||||||||||||||||| |||||||  |  |||||   |||  | ||  |  | || || || || || |||||||| || |  ||  |||| ||     
gtacgttgtgcaaatatacgtactgcctctgtccaaaaaatgattgtaattctcgcttttaataagtcaatcaatatcaagtttgatcaaatagatacaaaaggtactaataatatcattagattaatagtaatgttcttgactgaagaaggatactaacttgcatccttgtggttattactttcagGTTCTGGATGAAATTCACCACCAATCTGCTGCGTTATCGTCATCAAGACCAGCGTTTTCTTCAATTGGATCTGTTCCTGCTCCAAGGGAGATTGTTGAGC---

upper sequence: GLYMA09G35060.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G45290.2 (Arabidopsis thaliana), 3'ss of exon 3
--------gtaagttcaatgcactgtgttagttg-ttctggtggccatcgttttataattatacaagttgaatatttgta-catattttaattagGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCATCTCGCC---CTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCT
         |   |||  | | |  |  ||   | || | |   | ||| |||  |  | ||  | | | |  || |  |    |||    ||||||||| ||||||||||| ||||||||||| || ||||| ||||  |   | || || |||||||| || || |||||||||||||| ||||||||||| |   
gtaaatacatgttttcggt-ctccctactaacagctttttgccactatc-tttctttctcatgtatgctaaggatctacagtgcattcattttagGTTCTTGATGAAATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATT---

upper sequence: GLYMA09G35060.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
---------gtaagtt-caatgcactgtgttagttgttctggtggccatcgttttata--att--atacaagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCATCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCT
          ||  ||   ||    |||| | ||   | |    |   |   ||| ||  |||  ||| ||||||||| ||| |  |||  |    ||||||||||||||||||||||||||||||||||| ||||| || || |||||||| || ||||| ||||| |||||||| || ||||| ||||| ||||| |
gtgatgctaatatattattatattttgtgatggtcacttttccagtattttctttgtatcattcaatataagttgaatttttttttataccta---tagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtggccatcgttttataattatacaagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCATCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCT
           ttttataattatacaa  TA-rich tract