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gtaagttcagcaaaatccaaaggaatttcaacatctaaatttaaggaaaatactagtaattagtctttttaattaaattttaatattgtgatgtggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT
species | Glycine max |
transcript | GLYMA09G35050.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGEST: gi|21888360|gb|BQ741573.1|BQ741573
genomic: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCAgtaagttcag ... tggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAG
EST: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGEST: gi|9986444|gb|BE660552.1|BE660552
genomic: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCAgtaagttcag ... tggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAG
EST: GGTATTGTGACGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGEST: gi|9898765|gb|BE607733.1|BE607733
genomic: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCAgtaagttcag ... tggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAG
EST: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGEST: gi|37995321|gb|CF806910.1|CF806910
genomic: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCAgtaagttcag ... tggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAG
EST: GGTATTGTGACGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGEST: gi|9820186|gb|BE555696.1|BE555696
genomic: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCAgtaagttcag ... tggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAG
EST: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGEST: gi|15287443|gb|BI471334.1|BI471334
genomic: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCAgtaagttcag ... tggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAG
EST: GGTATTGTGACGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA GTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGEST: gi|15664114|gb|BI701485.1|BI701485
genomic: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCAgtaagttcag ... tggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAG
EST: GGTATTGTGACGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCA GTGACTAAGTTGCACTTCAGAGGAAGTAGGATTTTCAATGCTGTCATGGAG
genomic: GGTATTGTGATGGTTCATCATTTACTGGTGATGTGGAAGCAGTGAATCCAgtaagttcag ... tggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAG
aatactagtaattagtctttttaattaaattttaatattgtgatgtggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT
ttttaat putative branch site (score: 3)
tagtaattagtctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcagcaaaatccaaaggaatttcaacatctaaatttaaggaaaatactagtaattagtctttttaattaaattttaatattgtgatgtggaaatcagGTGACTAAGTTGCACTTCAGAGGAGGTAGGATTTTCAATGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA