1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgttgagattgtcattgttgtcacctgttgagatatatttaataactttttgttttatttccaactcaaactgattgcccttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT
species | Glycine max |
transcript | GLYMA09G34310.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|254314835|gb|GR829828.1|GR829828
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: GGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|254314836|gb|GR829829.1|GR829829
genomic: GGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: GGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|9898715|gb|BE607683.1|BE607683
genomic: GGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|15201585|gb|BI424950.1|BI424950
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: ATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|22524613|gb|BU083424.1|BU083424
genomic: ATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|19269301|gb|BM885557.1|BM885557
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|193449468|gb|FK416447.1|FK416447
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCGACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCAGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCEST: gi|58023449|gb|CX710190.1|CX710190
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|254334177|gb|GR849095.1|GR849095
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|23726775|gb|BU761390.1|BU761390
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|207781943|gb|GD750980.1|GD750980
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|298190509|gb|HO032630.1|HO032630
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|9203805|gb|BE330029.1|BE330029
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|24136736|gb|BU927246.1|BU927246
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|21888564|gb|BQ741777.1|BQ741777
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: GGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|254334178|gb|GR849096.1|GR849096
genomic: GGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|19053931|gb|BM732598.1|BM732598
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGEST: gi|16348569|gb|BI974164.1|BI974164
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAG
EST: AAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|8402724|gb|BE058358.1|BE058358
genomic: AAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|208143212|gb|GD942846.1|GD942846
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTAATTCCCTTGAGTGTEST: gi|11411664|gb|BF423675.1|BF423675
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTA-TTCCCTTGAGTGT
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|9902906|gb|BE611874.1|BE611874
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|120492821|gb|EH220988.1|EH220988
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACEST: gi|193376162|gb|FK342555.1|FK342555
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCAC
EST: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAG TCGGCCT-CG-A-GATCGAACTATT
genomic: AAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGgtgttgagat ... ttacttgcagTCGGCCTTCGGAAGATCGAACTATT
tatttaataactttttgttttatttccaactcaaactgattgcccttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT
cccttactt CT-rich tract
aataactttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttgagattgtcattgttgtcacctgttgagatatatttaataactttttgttttatttccaactcaaactgattgcccttacttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCT
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