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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaactattttcgtagtgaagtcctatggaattcacaattcttcagttgaatattcagttaaagaataacagttggttaatcctgaataaatttccagGATGGCATGCTATGTTTTGGGCATCCTTAATTCCTGTTGTG

Basic information

species Glycine max
transcript GLYMA09G32920.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32920.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 9
gtgagcaactattttcgtagtgaagtcctatggaattcaca--attcttcagttgaatattcagt-----taaagaataacag--ttggttaatcctgaataaa-----------tttccagGATGGCATGCTATGTTTTGGGCATCCTTAATTCCTGTTGTG
|| ||| ||| ||| |  |   ||     |   ||   | |  |||    |||  |  |||  ||      |||    ||||   ||  ||| | || || |||            || |||||||||| || ||||||||||||||| |||||||  | |||
gtaagccactctttccaaaacaaaagaaaaaaaaaaaaaaatcatttccaagtaaataattttgtgtttccaaattgaaacaaacttctttattgcttaacaaaatattttgcccctttcagGATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttgaatattcagttaaagaataacagttggttaatcctgaataaatttccagGATGGCATGCTATGTTTTGGGCATCCTTAATTCCTGTTGTG
                                                tttcc  CT-rich tract
      aatattcagttaaa  TA-rich tract