1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgacttcatattaatttcttcttggtctatgacatgatttatagtgtatttatttctcacattctaattgactttttatatgatggtgatgcacttgcagATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATATTA
species | Glycine max |
transcript | GLYMA09G31760.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAATCAACTTATATGAGTTATGTGAAGCTGTTGGTCCTGACCCCACCAG ATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGAEST: gi|207734774|gb|GD709267.1|GD709267
genomic: CTAATCAAC-TATATGAGCTATGTGAAGCTGTTGGTCCTGACCCCACCAGgtaaaacctt ... gcacttgcagATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGA
EST: TCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGACCCCACCAG ATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGAEST: gi|207719898|gb|GD704385.1|GD704385
genomic: TCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGACCCCACCAGgtaaaacctt ... gcacttgcagATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGA
EST: TTGGTCCTGACCCCACCAG ATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGAEST: gi|208072338|gb|GD870270.1|GD870270
genomic: TTGGTCCTGACCCCACCAGgtaaaacctt ... gcacttgcagATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGA
EST: GGTCCTGACCCCACCAG ATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGA
genomic: GGTCCTGACCCCACCAGgtaaaacctt ... gcacttgcagATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGA
gtatttatttctcacattctaattgactttttatatgatggtgatgcacttgcagATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATATTA
attctaattgactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacttcatattaatttcttcttggtctatgacatgatttatagtgtatttatttctcacattctaattgactttttatatgatggtgatgcacttgcagATCAGAATTGGTCCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-gacttca
- - - - - - - - -cttcttg
- - - - - - - - - - - - - - -tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtg