Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagattctagccaaaaaactttagaagttattcttatagtattattttgttcaatcagccactgagattcaaataaaacatctctagttaaccaagctgatgtgagcatatgcatgtaatatcagaaaatgaatactcgttcttaaattgttgtccttgtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCGGGCAAAGATATTGTGTTTGAGT

Basic information

species Glycine max
transcript GLYMA09G31560.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31560.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g27940.1 (Oryza sativa), 3'ss of exon 5
gtaaagattctagccaaaaaactttagaagttattcttatagtattattttgttcaatcagccactgagattcaaataaaacatctctagttaaccaagctgatgtgagcatatgcatgtaatatcagaaaatgaatactcgttcttaaattgt-tgtccttgtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCGGGCAAAGATATTGTGTTTGAGT
                                                                || || |  |  | ||||||    | | |     ||| |||     || |  |||   | ||    |||  | ||     || |  |||| ||  |||||   |  || ||||  ||||||| |||||||| |||||||||||||||||  | || |||||     | || |||||||  || |  || || ||  | ||||| || |
-------------------------------------------------------------taccttagctgtatttcaaacat----aatcacgggcgctaatg-----atttttatgctgtctcgctgaattcaaaca-acgctgaccttgtatgaacttgtgctg-cagATCTTCCTGGACCCAAAGGAGCGCAACAACACCGAGTACAAGCTCGACACTTTCAGCTCTGTCTACAGGAGGCTCTGTGGGAAGGACGTCGTGTTCGACT

upper sequence: GLYMA09G31560.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv17s0000g03530.t01 (Vitis vinifera), 3'ss of exon 6
gtaaagattctagccaaaaaactttagaagttattcttatagtattattttgttcaatcagccactgagattcaaataaaacatctctagt-taaccaagctgatgtgagcatatgc-atgtaatatcagaaaatgaatactcgttcttaaattgttgtccttgtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCGGGCAAAGATATTGTGTTTGAGT
                                                                      || |  ||||  ||   || | | |  |   |  ||  |  |      ||||    |  |         ||||   || |   | ||     ||| ||   || | || |||||||| || || || |||||||| ||||||||  ||||||| ||||||||||| |||||||| ||||| ||||||||| |||| |||||||
----------------------------------------------------------------------tttatttaaattattattattattattattattttgcaaaaaagaatgatgtgtccttggtttgcttgcactcacactca---tcttaattctgtatgtgcagATTTTCTTGGACCCAAAAGAACGCAACAACACTGAGTACAAGCTGGAGACCTTTGCTGCAGTTTACAGGAAGCTTTCAGGCAAAGATGTTGTCTTTGAGT

upper sequence: GLYMA09G31560.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ26379 (Selaginella moellendorffii), 3'ss of exon 4
gtaaagattctagccaaaaaactttagaagttattcttatagtattattttgttcaatcagccactgagattcaaataaaacatctctagttaaccaagctgatgtgagcata-tgcatgtaatatcagaaaatgaatactcgttcttaaattgttgtccttgtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCGGGCAAAGATATTGTGTTTGAGT
                                                                                                        || || | | | |   | || || |    |  |    ||  ||  ||  ||| |            ||||||   | ||||||||||| || |||| |||||||||||| |||||||| |   | |  || |||| ||| ||  | ||||| ||| | |  |||||||
--------------------------------------------------------------------------------------------------------gtaagaaaactccccttcatttccggcgctctagtgacgagctcgaaacgttttt---------gcagGTCTACCTTGACCCCAAGGAACGCAACAGCACCGAGTACAAGTTGGAGACGTACTCGGGTGTCTACAAGAAGCTGACTGGCAAGGATGTGGCATTTGAGT

upper sequence: GLYMA09G31560.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ14715 (Selaginella moellendorffii), 3'ss of exon 4
gtaaagattctagccaaaaaactttagaagttattcttatagtattattttgttcaatcagccactgagattcaaataaaacatctctagttaaccaagctgatgtgagcata-tgcatgtaatatcagaaaatgaatactcgttcttaaattgttgtccttgtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCGGGCAAAGATATTGTGTTTGAGT
                                                                                                        || || | | | |   | || || |    |  |    ||  ||  ||  ||| |            ||||||   | ||||||||||| || |||| |||||||||||| |||||||| |   | |  || |||| ||||||  | ||||| ||| | |  |||||||
--------------------------------------------------------------------------------------------------------gtaagaaaactccccttcatttccggcgttctagtgacgagctcgaaacgttttt---------gcagGTCTACCTTGACCCCAAGGAACGCAACAGCACCGAGTACAAGTTGGAGACGTACTCGGGTGTCTACAAGAAACTGACTGGCAAGGATGTGGCATTTGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316788|gb|FK006491.1|FK006491
EST:     TTGTTGGAAAGCGTGCTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|193427575|gb|FK393097.1|FK393097
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|6725373|gb|AW309772.1|AW309772
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|42723259|gb|CK769158.1|CK769158
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|19269462|gb|BM885718.1|BM885718
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|14516472|gb|BI095144.1|BI095144
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|6566755|gb|AW234387.1|AW234387
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGAAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|6846761|gb|AW349051.1|AW349051
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|209697634|gb|BW663889.1|BW663889
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|120492349|gb|EH220516.1|EH220516
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|15815255|gb|BI787530.1|BI787530
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|298198918|gb|HO042281.1|HO042281
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCC
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCC
EST: gi|14259267|gb|BG882175.1|BG882175
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGAC
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGAC
EST: gi|208246210|gb|GE045264.1|GE045264
EST:     TTGTTGGAA-GCGTGTTAGGTATAAA-TTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAA
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAA
EST: gi|193419978|gb|FK385416.1|FK385416
EST:     GGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: GGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|18724363|gb|BM523560.1|BM523560
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|7145699|gb|AW507621.1|AW507621
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|120493032|gb|EH221199.1|EH221199
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|192316789|gb|FK006492.1|FK006492
EST:     TTGTTGGAAAGCGTGCTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|5666823|gb|AI930859.1|AI930859
EST:     GTTGGTAATCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: GTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|193664989|gb|FK610921.1|FK610921
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|8286565|gb|BE024124.1|BE024124
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCCAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|193334814|gb|FK298422.1|FK298422
EST:     TGTTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TG-TTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|298197260|gb|HO042003.1|HO042003
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCC
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCC
EST: gi|192323455|gb|FK017096.1|FK017096
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|193508845|gb|FK466001.1|FK466001
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|209712423|gb|BW671275.1|BW671275
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|151409612|gb|EV279420.1|EV279420
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGGGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|10845937|gb|BF068952.1|BF068952
EST:     CAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: CAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|7692847|gb|AW760946.1|AW760946
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|207719103|gb|GD700284.1|GD700284
EST:     TTGTTGGAAAGCGTGTTAGGTATAAA-TTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAAGCGAAACAACACCGAGTACAA
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGA-GCGAAACAACACCGAGTACAA
EST: gi|193388666|gb|FK357555.1|FK357555
EST:     GGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: GGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|192302271|gb|FG996637.1|FG996637
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|192294666|gb|FG986515.1|FG986515
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|193552620|gb|FK506157.1|FK506157
EST:     GGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: GGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|19052859|gb|BM731526.1|BM731526
EST:     TTGTTGGAAAGCGTGTTAGGGATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCC-AAGGAGC
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGC
EST: gi|209718656|gb|BW674755.1|BW674755
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|120492975|gb|EH221142.1|EH221142
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|193349920|gb|FK316602.1|FK316602
EST:     AAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: AAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|192297263|gb|FG990611.1|FG990611
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|151394460|gb|EV264331.1|EV264331
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|13251849|gb|BG362752.1|BG362752
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|26058613|gb|CA801527.1|CA801527
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|120492814|gb|EH220981.1|EH220981
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|208150058|gb|GD944296.1|GD944296
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAA
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAA
EST: gi|7926240|gb|AW832266.1|AW832266
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAA                         GTCTTTTTGGACCCCAAGGAGCGAAAACA-CACCGAGTACAAATTGGAGAC
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAA-CAACACCGAGTACAAATTGGAGAC
EST: gi|209718655|gb|BW674754.1|BW674754
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGA
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGA
EST: gi|120492789|gb|EH220956.1|EH220956
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|15286708|gb|BI470599.1|BI470599
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACC
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACC
EST: gi|11413036|gb|BF425056.1|BF425056
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|6914822|gb|AW396352.1|AW396352
EST:     TGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTGTGCA-GATTATGAAA                         GTCTATGTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TGTTGGAAAGCGTGTTAGGTATAAAATTGATGGT-TCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|23729990|gb|BU763102.1|BU763102
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|19271206|gb|BM887462.1|BM887462
EST:     TTGTTGGAAAGCGTGTTAGGTATAANATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTG
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTG
EST: gi|11687439|gb|BF595115.1|BF595115
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTGTTTGGACCC-A-GGAGCGAAACACCAC-GAGTACAAATTG
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTG
EST: gi|22541298|gb|BU091141.1|BU091141
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|26056255|gb|CA799169.1|CA799169
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|14516473|gb|BI095145.1|BI095145
EST:     TTGTTGGAAAGCGTGTTANGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGAC
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGAC
EST: gi|207840710|gb|GD811911.1|GD811911
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|209712424|gb|BW671276.1|BW671276
EST:     TTGTTGGAAAGCGTCTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|192308744|gb|FK000106.1|FK000106
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
EST: gi|298177320|gb|HO027101.1|HO027101
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCA
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCA
EST: gi|16997262|gb|BM086634.1|BM086634
EST:     TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAG                         GTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT
genomic: TTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGgtaaagattc ... gtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaatatcagaaaatgaatactcgttcttaaattgttgtccttgtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCGGGCAAAGATATTGTGTTTGAGT
                                        tccttgtct  CT-rich tract
            aaaatgaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagattctagccaaaaaactttagaagttattcttatagtattattttgttcaatcagccactgagattcaaataaaacatctctagttaaccaagctgatgtgagcatatgcatgtaatatcagaaaatgaatactcgttcttaaattgttgtccttgtctggatagGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAATTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCGGGCAAAGATATTGTGTTTGAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG