1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatcttccaatacctcttatccctctatgcatttccatgtctttttctggcttgtgttgctcatagtatttgtttttttgtgatatagGCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAGATCTGATGCAAATCGTAAGCCTGATCACGATCCTTCGAAAGAGAAAGAG
species | Glycine max |
transcript | GLYMA09G28980.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAGTACCACTGGCATTTCGGGTTGAGCCAAAGCCCAAAAGTGGGATCAG GCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAGEST: gi|120532801|gb|EH260934.1|EH260934
genomic: TCAGTACCACTGGCATTTCGGGTTGAGCCAAAGCCCAAAAGTGGGATCAGgtaaatcttc ... tgtgatatagGCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAG
EST: TCAGTACCACTGGCATTTCGGGTTGAGCCAAAGCCCAAAAGTGGGATCAG GCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAGEST: gi|308097916|gb|HO761087.1|HO761087
genomic: TCAGTACCACTGGCATTTCGGGTTGAGCCAAAGCCCAAAAGTGGGATCAGgtaaatcttc ... tgtgatatagGCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAG
EST: ACCACTGGCATTTCGGGTTGAGCCAAAGCCCAAAAGTGGGATCAG GCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAG
genomic: ACCACTGGCATTTCGGGTTGAGCCAAAGCCCAAAAGTGGGATCAGgtaaatcttc ... tgtgatatagGCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAG
tccatgtctttttctggcttgtgttgctcatagtatttgtttttttgtgatatagGCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAGATCTGATGCAAATCGTAAGCCTGATCACGATCCTTCGAAAGAGAAAGAG
tttgttttttt CT-rich tract
tatttgtttttttgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcttccaatacctcttatccctctatgcatttccatgtctttttctggcttgtgttgctcatagtatttgtttttttgtgatatagGCAGCAAGACTTGCTGAAGAAAGTTGTTGAGATTAAACCTAAGCGGCCAAGATCTGATGCAAATCGTAAGCCTGATCACGATCCTTCGAAAGAGAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA