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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagaatgcaataatatgatttatcctgttgtgattgacagctgtccacacctgtgtaatgttttaatacttcttctatcttctgatgttttgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAGGTTATATACTCGAGATTATGA

Basic information

species Glycine max
transcript GLYMA09G28470.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G28470.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G23550.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------------------------------------------------------------------------gagaatgcaataatatgatttatcctgttgtgattgaca-gctgtccacacctgt---gtaatgttttaatacttcttcta-----------tcttctgatgttttgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAGGTTATATACTCGAGATTATGA
                                                                                  | | |  | ||    || |   |||  ||    | | | | | ||      |||     ||  | | || | |  |  |             ||| || | |||  |    |||||||||||||||||||||||||||||| ||  ||||||| ||||||||| |  |  | || |||||||| || ||||| | || |   |  | |      
gtatgctaaaacttgctttcaagctcttacatttttatcctaactttcttagtaatacaattacatgatatatactcttcgaatagtatattatcccgagtggacctaatgctccttatacggtttctgagtttgtcacaaaagctgtcaacattcatcttggagaatgaatcccttgtgttctttaaaactgcagGTATAGCTTGAGCTACATCCCTTTTGCAAGAACCATGGTCTCAAAGATCTTCATGACTTGTTTTGACACCGAGTTTTAAGCTACAGTTTACACACATCAG

upper sequence: GLYMA09G28470.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0130g00230.t01 (Vitis vinifera), 3'ss of exon 5
-gagaatgcaataatatgatttatcctgttgtgattgacagctgtccacacctgtgtaatgttttaatacttcttctatcttctgatgttttgattgac-agGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTT-AGGTTATATACTCGAGATTATGA
  | |||| |  ||  | |||  |  | ||         |    ||||      ||| || |  | ||   | |||  ||      | | |||| | || ||||| || || ||||||||||| || |||||| ||||||||||||||||||||||||| || |||||||||||||||| |||| || || | | ||||   |
aaataatgaagcaaagt-attcgttttctttcatcgcgtactcttccattttcctgttat-tcctcatgtattttccctcaatgattttgttgaataaccagGTACAGTTTAAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCATGGTTTCTTGTTTTGACACAGAATTTTGAGGTGATGTA-TGGTGATTGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306731|gb|CD391934.1|CD391934
EST:     AAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTG                         GTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCAT
genomic: AAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTGgtatgtcaca ... tgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacctgtgtaatgttttaatacttcttctatcttctgatgttttgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAGGTTATATACTCGAGATTATGA
          taatgttttaatactt  TA-rich tract