1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagaatgcaataatatgatttatcctgttgtgattgacagctgtccacacctgtgtaatgttttaatacttcttctatcttctgatgttttgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAGGTTATATACTCGAGATTATGA
species | Glycine max |
transcript | GLYMA09G28470.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGTTACTGACACTTCTTGCAATTATTTAGGAGTTTGGGGCACTTGTTTG GTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATEST: gi|192317986|gb|FK009466.1|FK009466
genomic: AAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTGgtatgtcaca ... tgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCAT
EST: AAGTTACTGACACTTCTTGCAATTATTTAGGAGTTTGGGGCACTTGTTTG GTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATEST: gi|298194667|gb|HO043139.1|HO043139
genomic: AAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTGgtatgtcaca ... tgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCAT
EST: AAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTG GTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATEST: gi|58015635|gb|CX702377.1|CX702377
genomic: AAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTGgtatgtcaca ... tgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCAT
EST: AAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTG GTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCAT
genomic: AAGTTACTGACACTTCTTGCAATTATTTTGGAGTTTGGGGCACTTGTTTGgtatgtcaca ... tgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCAT
cacacctgtgtaatgttttaatacttcttctatcttctgatgttttgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAGGTTATATACTCGAGATTATGA
taatgttttaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaatgcaataatatgatttatcctgttgtgattgacagctgtccacacctgtgtaatgttttaatacttcttctatcttctgatgttttgattgacagGTATAGCTTGAGCTACATCCCTTTTGCGAGGGCCATGGTTTCAAAGATCATGGTTTCATGCTTTGACACAGAATTTTAGGTTATATACTCGAGATTATGA
- gaatgca
- - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - -cagctgt
- - - - - - - - - - - - - - - - - - - - - - ccacacc