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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttgtaagctctttgccataaatgtctgattcaatacgtgattcaatttggtgctaataggttttggtttgttaatttggtgcatttcttccaactggttgttgtctttcagGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTGTCTTGTT

Basic information

species Glycine max
transcript GLYMA09G27300.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G27300.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G51980.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaagtttttgtaagctctttgccataaatgtctgattcaatacgtgattcaatttggtgctaataggttttggtttgttaatttggtgcatttcttccaactggttgttgtctttcagGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTGTCTTGTT
          |||||     | | |  | | ||| |||  ||  |   |  ||  |    ||| |   ||||  ||  || |  |  |   |||  |  |  || || |||| |   |||| ||||   | || |   | |||||| |||| ||||| || || ||  |||| |||||||||||| |  | |||||||| |||||||||||||||||||
----------gtaag-----tactagtattatct-attatatttgaattgaaaactctcactatt--tttttctttctttgagctaatctttttggtttatatgttttttgtttgatagGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCATTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTT

upper sequence: GLYMA09G27300.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0100g00320.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------------gtaagttttt-------gtaagctctttgccataaatgtctgat-tcaatacgtgattcaatttggtgc--taataggttttggtttgttaatttggtgcatttct------tccaac----tggttgttgtctttcagGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTGTCTTGTT
                                    |  | | |||        || |   | | | || |   |||| | |   ||   ||     ||| |     || | |  | || |||    | || || | || ||       |  ||    |  || |  | |||||||| |||||||||||||  ||||||||| | |||||  | || || || || || ||||| |||||| |||| ||||||||||| || ||||| |||||||
gtaagttggtttttagcatgatatgtattatccaatgagaatcttttagcatgatatgtattatccaatgagaatctggtattcttaaaggagcatctttagaaacatatttgaatctgttttagccacttagtcctttcctgatttgccttacgtaatatttctcttttttcagGTCTGGAACCTTGAAAATTTGCAGTGTCTGCAGACGTTGACTGAACATACTTCAGTTGTAATGTCTCTTCTTTGCTGGGACCAGTTTCTTTTATCTTGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggttttggtttgttaatttggtgcatttcttccaactggttgttgtctttcagGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTGTCTTGTT
            tgttaat  putative branch site (score: 3)
                                            ttgtctttc  putative PPT
          tttgttaattt  TA-rich tract