1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gactcaccaaatcatgttgtcttcaaattttatatggaagtatttttccatgatgacaattgtttagttttatgggcatttttctgtgtggtttatgcagGACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTCAGCAG
species | Glycine max |
transcript | GLYMA09G25070.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTG GACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTCEST: gi|208036589|gb|GD834854.1|GD834854
genomic: TCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTGgtaactgccg ... gtttatgcagGACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTC
EST: TCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTG GACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTCEST: gi|208244708|gb|GE038917.1|GE038917
genomic: TCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTGgtaactgccg ... gtttatgcagGACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTC
EST: TCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTG GACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTCEST: gi|58022034|gb|CX708775.1|CX708775
genomic: TCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTGgtaactgccg ... gtttatgcagGACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTC
EST: TCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTG GACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTC
genomic: TCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTGgtaactgccg ... gtttatgcagGACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTC
ttccatgatgacaattgtttagttttatgggcatttttctgtgtggtttatgcagGACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTCAGCAG
aattgtttagttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactcaccaaatcatgttgtcttcaaattttatatggaagtatttttccatgatgacaattgtttagttttatgggcatttttctgtgtggtttatgcagGACTACCAGGTGTAGTTAAGAAGTTGCTGAGTTATGTAGTTAAAAATGTTCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT