1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgtgatgaagtttccttttttaagtattaaagattttttatatttattgttgtcttgatattttaattagtagtttaatgttctttttcttagtgcagTTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGACCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGTATAGA
species | Glycine max |
transcript | GLYMA09G24400.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCGGTTGGTGAATCTAATGGTCAAGGGAATAAAATCCATCCATTGAGAG TTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGACCEST: gi|6725335|gb|AW309734.1|AW309734
genomic: GCCGGTTGGTGAATCTAATGGTCAAGGGAATAAAATCCATCCATTGAGAGgcaaggtttt ... cttagtgcagTTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGACC
EST: GGTTGGTGAATCTAATGGTCAAGGGAATANAATCCATCCATTGAGAG TTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGACCEST: gi|254334102|gb|GR849020.1|GR849020
genomic: GGTTGGTGAATCTAATGGTCAAGGGAATAAAATCCATCCATTGAGAGgcaaggtttt ... cttagtgcagTTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGACC
EST: GCCGGTTGGTGAATCTAATGGTCAAGGGAATAAAATCCATCCATTGAGAG TTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGAC
genomic: GCCGGTTGGTGAATCTAATGGTCAAGGGAATAAAATCCATCCATTGAGAGgcaaggtttt ... cttagtgcagTTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGAC
ttattgttgtcttgatattttaattagtagtttaatgttctttttcttagtgcagTTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGACCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGTATAGA
tgttctttttctt CT-rich tract
atattttaattagtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtgatgaagtttccttttttaagtattaaagattttttatatttattgttgtcttgatattttaattagtagtttaatgttctttttcttagtgcagTTCTTCCAGATTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGACCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGTATAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc