1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattaatgatatgcaactcgatatcaatgttactgagtagtagtagttgtcaacttaacatgtccctatattaatatgactagatgatactatatttgaaggtacttcagacttgacacatcatggatattcacttcttgatttctcctgtagATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTCTCGATGATTGGAGATGCCTTCAAAGAGCGGGGTATGCTAGACAAATACC
species | Glycine max |
transcript | GLYMA09G24100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG ATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTCEST: gi|151406612|gb|EV276427.1|EV276427
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattaatga ... tctcctgtagATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTC
EST: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG ATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTCEST: gi|192310105|gb|FK001887.1|FK001887
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattaatga ... tctcctgtagATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTC
EST: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAG ATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTCEST: gi|151399583|gb|EV269454.1|EV269454
genomic: AAATGATATCTATCTACCATAAGAGGGGCATGCATGAGAAGATGTTTGAGgtattaatga ... tctcctgtagATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTC
EST: AAGAGGGGCATGCATGAGAAGATGTTCGAG ATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTC
genomic: AAGAGGGGCATGCATGAGAAGATGTTTGAGgtattaatga ... tctcctgtagATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTC
aaggtacttcagacttgacacatcatggatattcacttcttgatttctcctgtagATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTCTCGATGATTGGAGATGCCTTCAAAGAGCGGGGTATGCTAGACAAATACC
tcttgat putative branch site (score: 4)
cttcttgatttctcct CT-rich tract
atattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaatgatatgcaactcgatatcaatgttactgagtagtagtagttgtcaacttaacatgtccctatattaatatgactagatgatactatatttgaaggtacttcagacttgacacatcatggatattcacttcttgatttctcctgtagATATTTGCAGACATGGAGGAGCTTTGTCTTCGACCTAATATTGTTGTTGTCTCGATGATTGGAGATGCCTTCAAAGAGCGGGGTATGCTAGACAAATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG