1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcttatagtggtgttagcttttcattcaatattttttttaggtgttcggttcatattttgggaacttattatatatttgttcttgtatctctgcctgcagCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGTGATCGCAA
species | Glycine max |
transcript | GLYMA09G15720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGTGTACTATGCCACTAGAGCTTCCCTTGGGCTTGCATTTGAATGGAG CTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATEST: gi|11412301|gb|BF424312.1|BF424312
genomic: GGTGTGTACTATGCCACTAGAGCTTCCCTTGGGCTTGCATTTGAATGGAGgtgggttaga ... ctgcctgcagCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAAT
EST: GGTGTGTACTATGCCACTAGAGCTTCCCTTGGGCTTGCATTTGAATGGAG CTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATEST: gi|15813644|gb|BI785919.1|BI785919
genomic: GGTGTGTACTATGCCACTAGAGCTTCCCTTGGGCTTGCATTTGAATGGAGgtgggttaga ... ctgcctgcagCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAAT
EST: GGTGTGTACTATGCCACTAGAGCTTCCCTTGGGCTTGCATTTGAATGGAG CTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAAT
genomic: GGTGTGTACTATGCCACTAGAGCTTCCCTTGGGCTTGCATTTGAATGGAGgtgggttaga ... ctgcctgcagCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAAT
tcggttcatattttgggaacttattatatatttgttcttgtatctctgcctgcagCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGTGATCGCAA
tctctgcct CT-rich tract
ttattatatatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttatagtggtgttagcttttcattcaatattttttttaggtgttcggttcatattttgggaacttattatatatttgttcttgtatctctgcctgcagCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGTGATCGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - agtggtg
- - - - - - - - - - - cattcaa