1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttctaagaaaacattgtatctttgagaattgaaagcgcaattttcaattttcagttgtaaaacttcattgtatgagcattaaatatgccatgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACAATGGAGCTTGGATCTGCTCGGAACTCAGACAGGTCTAGTCAAGAATCCC
species | Glycine max |
transcript | GLYMA09G09350.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGATTCAGGAATCATGACCAAG ATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACAEST: gi|6094724|gb|AW119388.1|AW119388
genomic: TGCTTGATTCAGGAATCATGACCAAGgtatctttat ... atgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
EST: TGCTTGATTCAGGAATCATGACCAAG ATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACAEST: gi|192328412|gb|FK020123.1|FK020123
genomic: TGCTTGATTCAGGAATCATGACCAAGgtatctttat ... atgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
EST: AGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGAATCATGACCAAG ATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
genomic: AGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGAATCATGACCAAGgtatctttat ... atgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACA
caattttcagttgtaaaacttcattgtatgagcattaaatatgccatgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACAATGGAGCTTGGATCTGCTCGGAACTCAGACAGGTCTAGTCAAGAATCCC
attaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctaagaaaacattgtatctttgagaattgaaagcgcaattttcaattttcagttgtaaaacttcattgtatgagcattaaatatgccatgtttgcagATAAAGCAGGCTTCTATGATTCTGGTCAAGATGTATATGAAAAGAGTGACAATGGAGCTTGGATCTGCTCGGAACTCAGACAGGTCTAGTCAAGAATCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgcc