Sequence
atgc intronic sequence ATGC exonic sequencegtaataaaacagacgactatgaaaaaatgccaagtggcctgttatctttttgttttcatgctgttgaaatatgcatgatattttattgtagGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCT
Basic information
species | Glycine max |
transcript | GLYMA09G08830.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G08830.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G79940.3 (Arabidopsis thaliana), 3'ss of exon 5
gtaataaaacagacgactatgaaaaaatgccaagtggcctgttatctttttgttttcatgctgttgaaatatgcatgatattttattgtagGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCT
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gtaaggatacat-ctcctttcccttcgcatgtgctcccgtcttattgacaagcctat-tgagactaaaatat---tgttatgtgatcgcagGGATTTCAAATGGGCATTGCTCTTCCTCAATTTCTTCTAGACATTGATGGAGCATCTGGTGGCATATTATTGCTTTGGATAGTTGGTGTCTGTATTCTCT
upper sequence: GLYMA09G08830.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g01460.t01 (Vitis vinifera), 3'ss of exon 4
---------------gtaataaaacag-acgactatgaaaaaatgccaagtggcctgttatctttttgttt----tcatgctgttgaaat---atgcatgatattttattgtagGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCT
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gtaatgaatttccctatgataaggaaggacttgctttgatatttacctaaaaataaagaaactatttataagaaatcatgtttctgaaactgaatgtactatctgttgatgcagGGATTTCAAATGGGCATAGCTCTCCCTCAGTTCCTGTTAAACTTTGATGGAGCAACTGGTGGAATTCTTTTACTTTGGATTGTTGGTGTTTGTATTCTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193499753|gb|FK462206.1|FK462206EST: CAACAGCTCGTGAAAATTATGAAAA-TATGGCCATCCTGATGGCAGGCAG GGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGAT
genomic: CAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGgtaataaaac ... tttattgtagGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcctgttatctttttgttttcatgctgttgaaatatgcatgatattttattgtagGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCT
ttttatt CT-rich tract
aaatatgcatgatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataaaacagacgactatgaaaaaatgccaagtggcctgttatctttttgttttcatgctgttgaaatatgcatgatattttattgtagGGATTCCAAATGGGTATAGCTCTTCCTCAATTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA