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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgactattggtttctaattgatttaagtatatcatttattctggtatctgctaagatatttcatggcaaccttttcatttattctgtctaattttacagAATGAATATTCAGAACAATGGGCTATGGCATGTGGTGAAATTTTGCGTATTTTAACTCATTACAATCGCCCCATATACAAAATGGAAAGGCAATATTGTG

Basic information

species Glycine max
transcript GLYMA09G07240.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07240.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G22770.1 (Arabidopsis thaliana), 3'ss of exon 4
atgactattggtttctaattgat-ttaagtatatcatttatt---ctggtatctgctaagatatttcatggcaaccttttcatttattctgtctaattttacagAATGAATATTCAGAACAATGGGCTATGGCATGTGGTGAAATTTTGCGTATTTTAACTCATTACAATCGCCCCATATACAAAATGGAAAGGCAATATTGTG
          || | |||| | | |  |||||     ||| |    |||| |   |||    ||||  ||  ||| | ||||          |||   | ||||||||| ||||| || ||||||||| |||||||||| |||||  | || ||||| ||||||||||| || ||||| || ||||  ||   |||| || | |
----------gtatataatagctgtctagtatcatgcttactgatttggtgtaacctataccattttgtgctaacatgttca----------ctatcctaacagAATGACTATTCGGAGCAATGGGCTTTGGCATGTGGAGAAATCCTTCGCATTTTGACTCATTACAACCGTCCCATTTATAAAACTGAGCAGCAAAATGGAG

upper sequence: GLYMA09G07240.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------------------------------------------atgactattggtttctaattga--------tttaagtat--atcatttattctggtatctgctaagatatttcat--ggcaaccttttcatttattctgtctaattttacagAATGAATATTCAGAACAATGGGCTATGGCATGTGGTGAAATTTTGCGTATTTTAACTCATTACAATCGCCCCATATACAAAATGGAAAGGCAATATTGTG
                                                                 | | ||  |||||  || |        |||  || |     | ||||||     |||  |  |||   | |   | |||    |     ||   | |   |  || |||||||| ||||| |||||||||||| |||||||||| || |||||||| ||||||||||||||||||||||| || |||||  |||||   ||     |||
gtatgtcgtgctggcatgactgaacaaatttgagttgctctgctttcaaatatcttgctcatgctattttttctttcttgttaaactgtagttttgggttttagaaacttattcccaattcttatgtgattgatgagtggacaagagatcgtgatacatttttctaaattgcagAATGAGTATTCTGAACAATGGGCTCTGGCATGTGGGGAGATTTTGCGAATTTTAACTCATTACAATCGCCCAATTTACAAGGTGGAACATCAGAGCAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctgctaagatatttcatggcaaccttttcatttattctgtctaattttacagAATGAATATTCAGAACAATGGGCTATGGCATGTGGTGAAATTTTGCGTATTTTAACTCATTACAATCGCCCCATATACAAAATGGAAAGGCAATATTGTG
                                         gtctaat  putative branch site (score: 3)
                           ttttcatttattct  TA-rich tract