1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttcaggctttctcttcatgctttttattgtttaaaaagattccgagatagatgatttgtgacttgtagctgtccttgttgcatatatttttctaagagcgtaatggtcatttgttggttctgtacactaattgtgatattgtatttagttttgactgaactgctatgatttctacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGG
species | Glycine max |
transcript | GLYMA09G04910.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG AAATTTATCAACATCTGCTTTGATGEST: gi|192331343|gb|FK019632.1|FK019632
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATG
EST: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGEST: gi|19934922|gb|BQ079952.1|BQ079952
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
EST: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCAEST: gi|8827691|gb|BE211421.1|BE211421
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCA
EST: TNTCANAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG AAATNTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGEST: gi|193496805|gb|FK460767.1|FK460767
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
EST: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGEST: gi|209725601|gb|BW657981.1|BW657981
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
EST: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAG AAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAGATGGCCACG
genomic: TTTCAGAACAAAAGTACAGCGGTTGTTTCAGCCTCTGGTTCATCTGAAAGgttcaggctt ... tacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACG
taattgtgatattgtatttagttttgactgaactgctatgatttctacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGG
tttctac CT-rich tract
atattgtatttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaggctttctcttcatgctttttattgtttaaaaagattccgagatagatgatttgtgacttgtagctgtccttgttgcatatatttttctaagagcgtaatggtcatttgttggttctgtacactaattgtgatattgtatttagttttgactgaactgctatgatttctacattacagAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGTATGGCACGCACCATGGAAGAACTACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC