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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagaattctgctttcgaagttggttaatatgcttcacttatcttggtattgtttaattcttttttggtaacttttattatattttgttaaactatattataaatttcctgtctttatatgtgcagGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTAGACATCATTGTTTTTGATGTACTGCCTGCCTCAG

Basic information

species Glycine max
transcript GLYMA09G04620.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 4
gtatagaattctgctttcgaagttggttaatatgcttcacttatcttggtattgtttaattcttttttggtaacttttattatattttgttaaactatattataaatttcctgtctttatatgtgcagGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTAGACATCATTGTTTTTGATGTACTGCCTGCCTCAG
                                         ||| |  |  || |  | || |  |||| | ||   ||||    | |  ||    |  |  | ||||   | |   |  |    |||   |||||||| ||||| || ||||||||||| ||||| | ||| ||||| ||| || ||| | ||||| ||||| ||||||||| | ||||       |
----------------------------------------gtat-taagccttttgcagttttgctttgtttacagatatttggctgttgtatctgagttgttcaattggttattccttaa----cagACCTGGGCTGTCCTGAAGCCAGGATTCTTGGCTTTGCTTGAAGACCCTTTTGATCCAAAGCTTTTAGACGTCATTATTTTTGATGCATTGCCACATATGG

upper sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 5
gtatagaattctgctttcgaagttggttaatatgcttcacttatcttggtattgtttaattcttttttggtaacttttattatatt-ttgttaaact---atattataaatttcctgtctttatatgtgcagGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTAGACATCATTGTTTTTGATGTACTGCCTGCCTCAG
                             |  || ||| ||| | ||    |  ||| ||  |   |  | |  | || || | || || ||| | |   || |||| |  ||| ||  ||| |||  |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||  || | |||||| |||| || |||||||||||| | || ||||||||||
-----------------------------aagtgtttctctt-ttttatcgtcctttgatagtacgtctgcatttgtttttttgttcttcttacattttcattttatcacattcttgaatttttat--gcagGTGTGGGCTGTATTGAAACCTGGATTCTTGGCCTTGCTGGAAGATCCTTTTCATCCTCAGCCTTTAGATATTATTGTTTTTGATCTGCTACCTGCCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttattatattttgttaaactatattataaatttcctgtctttatatgtgcagGTATGGGCTGTACTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTCGATACACAGCCTCTAGACATCATTGTTTTTGATGTACTGCCTGCCTCAG
                                 tttcctgtctttat  CT-rich tract
     attatattttgttaaa  TA-rich tract