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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaatagatatttctgttcctcttatgcctttcaatgttctacaattttgatattgtaatttgtatatttgtatttatcttgtcagaattagctgacggttaattattttgtttaccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG

Basic information

species Glycine max
transcript GLYMA09G02960.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02960.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G058584_T01 (Zea mays), 3'ss of exon 7
gtaagttgaatagatatttctgttcctcttatgcctttcaatgttctacaattttgatattgtaatttgtatatttgtatttatcttgtcagaattagctgacggttaattattttgtttaccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG
                             ||||| |  |  |  || |  ||  |   |    ||||   ||  ||  ||| |   |||  |||     | |    || ||  | | | | |||||||||||| ||||| ||||| ||||||||||||||||| |  || || |  || ||||| |  | |||||||
----------------------------gtatgcttgcctctactcaa--atcctctcaactgaattaagattatta-attcac--tgtttgaagcttttcata--tagtttctctttctgccagCCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAG

upper sequence: GLYMA09G02960.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G63890.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaagttgaatagatatttctgttcctcttatgcctttcaatgttctacaattttgatattgtaatt----tgtatatttgtatttatcttgtcagaattagctgacggttaattattttgtttaccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG
                               |   ||   ||||| || | ||||| |  |  | ||    ||||  |||||| | ||||||||    ||  |       ||  || ||  | |  |||||||| |||||||| |||||||||||  |||||||||||| ||| |||| |  |||||| |  |  || |||
------------------------------gtaagttctcatgttttatacttttgcttgttcatttctcttgtaattttgtaataatcttgtcttctttttccttacccta--tacttc-tctctcagCCTGCTCAAATTGCTGGATGTAAAACAGTTGTTCTTGCAACTCCACCAAGTAAGGATGGAAGCATTTGTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttgtatttatcttgtcagaattagctgacggttaattattttgtttaccagCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG
                                          ttttgttt  CT-rich tract
                                   ttaattattttgttta  TA-rich tract