1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgtttgttttctcgtctttctgctgttgttccaacgagtctggtgagtgaattccctagtttattgatttcccttttatttgtgactatttcaactgcagGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTACAATCAAGTTCTGCCAAAAGTAGTTTTATGGAC
species | Glycine max |
transcript | GLYMA09G02830.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACG GTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTCEST: gi|151394014|gb|EV263885.1|EV263885
genomic: ACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACGgttagacatg ... tcaactgcagGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTC
EST: ACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACG GTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTCEST: gi|120495547|gb|EH223714.1|EH223714
genomic: ACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACGgttagacatg ... tcaactgcagGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTC
EST: ACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACG GTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTC
genomic: ACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACGgttagacatg ... tcaactgcagGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTC
agtgaattccctagtttattgatttcccttttatttgtgactatttcaactgcagGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTACAATCAAGTTCTGCCAAAAGTAGTTTTATGGAC
tattgat putative branch site (score: 3)
ctatttc putative PPT
tagtttattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtttgttttctcgtctttctgctgttgttccaacgagtctggtgagtgaattccctagtttattgatttcccttttatttgtgactatttcaactgcagGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTACAATCAAGTTCTGCCAAAAGTAGTTTTATGGAC
- - - - - - - - - -ctgctgt
- - - - - - - - - - - - - - - - - -gagtctg
- - - - - - - - - - - - - - - - - - - - - -tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - tccctag