1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatttcattttcctagtgcaagttgtgtatccactatggcttagcacagtttttgcctaatttgtaatttagtggtgtcatacatttgcatatcgagtctaattgaagcaagttggtgcttgctaactgttcttcaaaaaaaaatatcatcacactgcagGCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCGATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATCAGTGCTA
species | Glycine max |
transcript | GLYMA09G02030.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG GCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCGEST: gi|21600851|gb|BQ611182.1|BQ611182
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... cacactgcagGCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCG
EST: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG GCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCGEST: gi|192325737|gb|FK015094.1|FK015094
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... cacactgcagGCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCG
EST: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG GCGGAAAAGCACTTGCAGAEST: gi|192323973|gb|FK015694.1|FK015694
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... cacactgcagGCGGAAAAGCACTTGCAGA
EST: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG GCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCGEST: gi|7147320|gb|AW509242.1|AW509242
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... cacactgcagGCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCG
EST: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCTAGTGGAG GCGGAACAGCACTTGCAGATTCTCCAGGATGCAGAGAGGAGATACATGGCGEST: gi|193471904|gb|FK437775.1|FK437775
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... cacactgcagGCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCG
EST: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAG GCGGAAAAGCACTTGCAGATTCGCCAGGATG
genomic: CATTGAGAGCACAGATGGAAGTGCAAAGTAAATTACATTTGCAAGTGGAGgtaaatttca ... cacactgcagGCGGAAAAGCACTTGCAGATTCGCCAGGATG
aagcaagttggtgcttgctaactgttcttcaaaaaaaaatatcatcacactgcagGCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCGATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATCAGTGCTA
tgctaac putative branch site (score: 1)
ttcttcaaaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttcattttcctagtgcaagttgtgtatccactatggcttagcacagtttttgcctaatttgtaatttagtggtgtcatacatttgcatatcgagtctaattgaagcaagttggtgcttgctaactgttcttcaaaaaaaaatatcatcacactgcagGCGGAAAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCGATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATCAGTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT