1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cttatcacagcgccaggctctggctccttttatagacattatgcatttaattgctctgcattctatctcactatgacatgccactttttgtgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTAAAGCTAGACTTTGAGTTGGAAATG
species | Glycine max |
transcript | GLYMA09G01270.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTCCGGAACAGATATTGTCCGGCCAAG AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTEST: gi|254346898|gb|GR856620.1|GR856620
genomic: ATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTEST: gi|6567242|gb|AW234853.1|AW234853
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTEST: gi|213601975|gb|DB976222.1|DB976222
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTEST: gi|151410471|gb|EV280286.1|EV280286
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTEST: gi|7924174|gb|AW830200.1|AW830200
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCGCTACTTTGGCCCTTCATTEST: gi|15664491|gb|BI701862.1|BI701862
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAG AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTEST: gi|208203370|gb|GD998810.1|GD998810
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: TTTCCGGAACAGATATTGTCCGGCCAAG AGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTEST: gi|192327116|gb|FK015508.1|FK015508
genomic: TTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
EST: GGACGGGCATCTTCTGTTGTTATTTCCG-AACAGATATTGTCCGGCCAAG AG-TCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
genomic: GGACGGGCATCTTCTGTTGTTATTTCCGGAACAGATATTGTCCGGCCAAGgtgattagtt ... tgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATT
tttaattgctctgcattctatctcactatgacatgccactttttgtgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTAAAGCTAGACTTTGAGTTGGAAATG
atctcac putative branch site (score: 3)
ctttttgtgctttcc putative PPT
attctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatcacagcgccaggctctggctccttttatagacattatgcatttaattgctctgcattctatctcactatgacatgccactttttgtgctttccagAGGTCAAGCTCATCCAGTTGGCAGCTCTACCCCCTACTTTGGCCCTTCATTAAAGCTAGACTTTGAGTTGGAAATG
- - - - - - ccaggct
- - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcca