1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtggactcttgttgcttatgttttagtttgtaccaaagccagagaggtctatttcaaatcttcatatcccaaattctctgctgctttgttgtcttttttcttgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
species | Glycine max |
transcript | GLYMA09G00580.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAG GTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAGEST: gi|192326652|gb|FK017309.1|FK017309
genomic: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAGgtggactctt ... tgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
EST: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAG GTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAGEST: gi|7924054|gb|AW830062.1|AW830062
genomic: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAGgtggactctt ... tgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
EST: TCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAG GTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAGEST: gi|193368168|gb|FK329984.1|FK329984
genomic: TCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAGgtggactctt ... tgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
EST: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAG GTTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAGEST: gi|18040851|gb|BM309145.1|BM309145
genomic: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAGgtggactctt ... tgtgttgtagG-TTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
EST: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAG GTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATEST: gi|151401621|gb|EV271434.1|EV271434
genomic: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAGgtggactctt ... tgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGAT
EST: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCA-TAGCATATGAG GTTTTGAAG-ATGAGGAAAGGCGTCAACAGTATGATCAGEST: gi|193702972|gb|FK639236.1|FK639236
genomic: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAGgtggactctt ... tgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
EST: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAG GTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAGEST: gi|7284029|gb|AW596629.1|AW596629
genomic: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAGgtggactctt ... tgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
EST: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAG GTTNTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
genomic: ATGATCCTCAAGCTGAAAAGAAGTTTCAAGAAGTTTCAATAGCATATGAGgtggactctt ... tgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
aatcttcatatcccaaattctctgctgctttgttgtcttttttcttgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
ttctctgctgctttgt CT-rich tract
ttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggactcttgttgcttatgttttagtttgtaccaaagccagagaggtctatttcaaatcttcatatcccaaattctctgctgctttgttgtcttttttcttgtgttgtagGTTTTGAAGGATGAGGAAAGGCGTCAACAGTATGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG