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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattctgatatactgtctcttcatcactgcttgtatcgtgcattttggtttcacagcctatgctttttaaaattttctgcagGTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACATTCGGAACAGA

Basic information

species Glycine max
transcript GLYMA09G00500.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734973|gb|BM528493.1|BM528493
EST:     GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATG                         GTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
genomic: GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATGgtattattct ... ttttctgcagGTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
EST: gi|298172196|gb|HO021788.1|HO021788
EST:     GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATG                         GTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
genomic: GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATGgtattattct ... ttttctgcagGTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
EST: gi|298176891|gb|HO026898.1|HO026898
EST:     GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATG                         GTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT
genomic: GTGGAAATGGTGCAACTACTGTTTCTGCAACAATGCTTTTTGCTTCAATGgtattattct ... ttttctgcagGTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgtatcgtgcattttggtttcacagcctatgctttttaaaattttctgcagGTTCATATTCCCGTTTTTGTTACTGGGGGGATTGGGGGAGTGCACAGACATTCGGAACAGA
                                             ttttctgc  CT-rich tract
                               tatgctttttaaaatt  TA-rich tract