1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcgccgcataatgttttggtgattagctattactaacattcttcatgaaattttctttctcgtttctctaatttggagttatgttcgtttctttgtcgggtcatagATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAAC
species | Glycine max |
transcript | GLYMA08G46090.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGACAGTTAAGCCACAAT ATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTCEST: gi|209724187|gb|BW659721.1|BW659721
genomic: TTGACAGTTAAGCCACAATgtaagcgccg ... cgggtcatagATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTC
EST: TAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAAT ATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTCEST: gi|193457448|gb|FK421968.1|FK421968
genomic: TAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATgtaagcgccg ... cgggtcatagATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTC
EST: TAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAAT ATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGA
genomic: TAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATgtaagcgccg ... cgggtcatagATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGA
tttctttctcgtttctctaatttggagttatgttcgtttctttgtcgggtcatagATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAAC
ctctaat putative branch site (score: 3)
ttcgtttctttgtc putative PPT
tctaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgccgcataatgttttggtgattagctattactaacattcttcatgaaattttctttctcgtttctctaatttggagttatgttcgtttctttgtcgggtcatagATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA