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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattttagatcatactgtcacttgcacttttatggaatcatacatttatttttccctctacatcactgctaattctgaaatgtggcttattttgccataaaatgtacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCTGAG

Basic information

species Glycine max
transcript GLYMA08G45960.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45960.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0757g00030.t01 (Vitis vinifera), 3'ss of exon 1
gtaagattttagatcatactgtcacttgcacttttatggaatcatacatttatttttccctctacatcactgctaattctgaaatgtggcttattttgccataaaatgtacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCTGAG
          | | |||    || |||     | |||| |   | |  |  | |   |    |   |   |  |||||    ||  ||  |   |||   ||||  ||   ||||||||| || || |||||||| |||||||| |||   |||||||||||| ||||||||
----------aaaccatgtcatccctt-----tgtatgaagcaaaatttgaaatgggctagtttggttgtt-ttaattgcagaaactgattctgttt--tataatgtggtaatttcagACTCACATCCACATAATCCCTCGTAAGGCAAGAGATTGCTTATGGACTTCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531567|gb|EH259700.1|EH259700
EST:     TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT                         ACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
genomic: TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCATgtaagatttt ... tacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
EST: gi|51341167|gb|CO982484.1|CO982484
EST:     TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT                         ACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
genomic: TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCATgtaagatttt ... tacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
EST: gi|254331676|gb|GR846093.1|GR846093
EST:     TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT                         ACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
genomic: TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCATgtaagatttt ... tacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
EST: gi|120530846|gb|EH258979.1|EH258979
EST:     TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT                         ACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
genomic: TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCATgtaagatttt ... tacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
EST: gi|254331675|gb|GR846092.1|GR846092
EST:     TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT                         ACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
genomic: TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCATgtaagatttt ... tacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
EST: gi|26047413|gb|CA784215.1|CA784215
EST:     TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT                         ACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT
genomic: TCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCATgtaagatttt ... tacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcactgctaattctgaaatgtggcttattttgccataaaatgtacatttcagACGCATATGCACATAATTCCTCGTAAAGCATATGATTGCTTATGGGCTTCTGAG
       tgctaat  putative branch site (score: 2)
                                     ataaaatgtacattt  TA-rich tract