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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcacattatagggtattctaaattggatttttgctataattcaaattatatccttacataaaatttaattgcaatgctgctctgattctttatacttatgcagACGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTCGCTGGCTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTG

Basic information

species Glycine max
transcript GLYMA08G45130.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302624|gb|FG996332.1|FG996332
EST:     ATGCAATTATAAATGCTGCGGAATTGGCTAGCTATGATAAAGTGAAACGG                         ACGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTC
genomic: ATGCAATTATAAATGCTGCGGAATTGGCTAGCTATGATAAAGTGAAACGGgtaatcacat ... acttatgcagACGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTC
EST: gi|192325751|gb|FK017973.1|FK017973
EST:     ATGCAATTATAAATGCTGCGGAATTGGCTAGCTATGATAAAGTGAAACGG                         ACGATTTTGAAA-TTCCAGGGTTCATGGACAATGTCTATACTCACCTACT
genomic: ATGCAATTATAAATGCTGCGGAATTGGCTAGCTATGATAAAGTGAAACGGgtaatcacat ... acttatgcagACGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatccttacataaaatttaattgcaatgctgctctgattctttatacttatgcagACGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTCGCTGGCTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTG
     ttacataaaatttaat  TA-rich tract