1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgcataaagtgctgacttatgatagtcatctgcttggcatagcttggattcattactatttattatttacctcttgaaaatgttttaaactttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTG
species | Glycine max |
transcript | GLYMA08G44410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTCTTACTTTTGCTTAGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGEST: gi|192306569|gb|FG997239.1|FG997239
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACEST: gi|31462046|gb|CD404074.1|CD404074
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACAC
EST: TCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGEST: gi|192312658|gb|FK004346.1|FK004346
genomic: TCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGEST: gi|9565805|gb|BE475314.1|BE475314
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: GCTTGGGTGAAC-TTTTCTTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGEST: gi|193609755|gb|FK560755.1|FK560755
genomic: GCTTGGGTGAACTTTTTC-TTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGEST: gi|193451079|gb|FK415693.1|FK415693
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTT-CTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGEST: gi|10255339|gb|BE823105.1|BE823105
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATG
EST: GGTGAACTTTTTCTTTTNNNGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGEST: gi|192312657|gb|FK004345.1|FK004345
genomic: GGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGEST: gi|208142885|gb|GD941497.1|GD941497
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAATGEST: gi|192323021|gb|FK016752.1|FK016752
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACEST: gi|192294522|gb|FG987451.1|FG987451
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACAC
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGEST: gi|11274440|gb|BF324793.1|BF324793
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGEST: gi|7588400|gb|AW704196.1|AW704196
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
EST: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAG CCAAGATACCCTTTCCATTGACACAGAGGTTTACGTCAATGCTACAGAACG
genomic: ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgtaatttttt ... tttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACG
ggattcattactatttattatttacctcttgaaaatgttttaaactttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTG
ctttcat CT-rich tract
attactatttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcataaagtgctgacttatgatagtcatctgcttggcatagcttggattcattactatttattatttacctcttgaaaatgttttaaactttcatgcagCCAAGATACCCTTTCCATTGACACAGAGGTTTAGGTCAATGCTACAGAACGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTG
- - - - -tgctgac
- - - - - - - - - - - - - catctgc
- - - - - - - - - - - - - - - - - - - - -gcttgga